PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G702026_P01
Common NameZm.4043
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 677aa    MW: 75129.4 Da    PI: 6.303
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G702026_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-23122222198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  GRMZM2G702026_P01 122 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmtQNPPWQ--ELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL-- 209
                        99**************************99975555545..8************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  GRMZM2G702026_P01 210 RGENGELRVGVRR 222
                        449999*****97 PP

2Auxin_resp105.94.6e-35248333183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdl...dpvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++s+err+sGt++g+ ++   +++ W nS+WrsLk
  GRMZM2G702026_P01 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKMSVGMRFKMRFEGDESPERRFSGTIIGMGCMpanSTSPWANSEWRSLK 333
                        789**************************************************************99874335679********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-43113251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40118237IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-21120222No hitNo description
SMARTSM010191.6E-21122224IPR003340B3 DNA binding domain
PfamPF023624.6E-21122222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462122224IPR003340B3 DNA binding domain
PfamPF065074.9E-33248333IPR010525Auxin response factor
PfamPF023091.1E-6531581IPR033389AUX/IAA domain
PROSITE profilePS5174525.201545627IPR000270PB1 domain
SuperFamilySSF542775.62E-12547623No hitNo description
PfamPF023095.3E-7592636IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAEAGVARGS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ  60
HLPLFNLPHK ILCKVVNVEL RAETDSDEVY AQIMLQPQTE QSEPTSPDPE PPEPERCNIH  120
SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELVAKDLHGN EWHFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM  240
HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKMSVGM RFKMRFEGDE  300
SPERRFSGTI IGMGCMPANS TSPWANSEWR SLKVQWDEPS AILRPDRVSP WEVEPLDRTN  360
PQPPQPPLRN KRARPPASPS IAPELAPVFG FWKSPAEPAQ AFSFSGLQRT QELYHSSPSS  420
MFSSSLNVGF NPKYEGPTPN TNHLYWTMRE TRTESYSASI NKAPTEKKQE STTSGCRLFG  480
IEIGSSAVSP VVTVASVGHD PPPPALSVDA ESDQLSQPSH ANKATDAPAA SSDRSPNETE  540
SRQARSCTKV IMQGVAVGRA VDLTRLDGYD DLRRKLEEMF DIPGELSASL KKWKVIYTDD  600
EDDMMLVGDD PWSEFCRMVK RIYIYSYEEA KSLTPKAKLP AIGGDTGVKP DPSKLPPESD  660
VPQSDSDNSA PVAADKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01135713356Auxin response factor 1
4ldw_A0.01135713356Auxin response factor 1
4ldw_B0.01135713356Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.40430.0ear| embryo| endosperm| leaf| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G702026
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G702026_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0652840.0BT065284.1 Zea mays full-length cDNA clone ZM_BFb0080F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152338.10.0uncharacterized protein LOC100285977
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLK4JBW90.0K4JBW9_MAIZE; Auxin response factor (Fragment)
TrEMBLC0PAG50.0C0PAG5_MAIZE; Auxin response factor
STRINGGRMZM2G702026_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1